YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73537922, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.61
Transmembrane Helix	10	27	0.75
Non-Cytoplasmic	28	339	0.87
Transmembrane Helix	340	359	0.88
Cytoplasmic	360	365	0.75
Transmembrane Helix	366	388	0.88
Non-Cytoplasmic	389	392	0.70
Transmembrane Helix	393	413	0.81
Cytoplasmic	414	437	0.88
Transmembrane Helix	438	459	0.92
Non-Cytoplasmic	460	469	0.78
Transmembrane Helix	470	493	0.87
Cytoplasmic	494	538	0.96
Transmembrane Helix	539	559	0.90
Non-Cytoplasmic	560	871	0.99
Transmembrane Helix	872	891	0.94
Cytoplasmic	892	897	0.81
Transmembrane Helix	898	917	0.94
Non-Cytoplasmic	918	923	0.78
Transmembrane Helix	924	943	0.89
Cytoplasmic	944	972	0.88
Transmembrane Helix	973	995	0.88
Non-Cytoplasmic	996	1004	0.74
Transmembrane Helix	1005	1027	0.91
Cytoplasmic	1028	1050	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFFIDRPI FAWVIALVIM LAGVLSIRSL PISQYPAIAP PTIAISVNYP GASAETVQDT  60
   61 VVQVIEQQLN GLDRLRYISS ESNADGSMTI TVTFEQGTNP DIAQVQVQNK LALAQPLLPQ 120
  121 EVQQQGIRVT KSVRNFLLIV GLISTDPKVT REDLSNYIVS NIQDPLSRTY GVGDFQVFGS 180
  181 QYAMRVWIDP AKLNSYQLTP LDVSNAIKAQ NVQVASGQLG GLPAVQGQQL NASVIGKTRL 240
  241 QTSEQFGNIL LKVNPDGSQV RLKDVAEVGL GGQDYNINAQ YNGQPASGIA VRLAAGANAL 300
  301 ETVRAIRKTL DTLEPFFPAG MKVVYPYDTS PVISGSIHEV VKTLMEAIVL VFLVMYLFLQ 360
  361 NFRATLIPTI AVPVVLLGTF GVLAAFGYTI NTLTMFGMVL AIGLLVDDAI VVVENVERVM 420
  421 AEEGLPPKEA ARRSMGQIQG ALVGIAMVLS AVFLPMAFFG GSTGVIYRQF SITIVSSMVL 480
  481 SVLVALILTP ALCATMLQPI EKGDHGENKG GFFGWFNRKF ISTTQGYERG VSTILKRRLP 540
  541 FVLIYVAILV AMGFLFTRIP TSFLPEEDQG VLYAQVQTPA GATAERTQKV LVQMREYLLK 600
  601 EEGGVVDSLF TVNGFNFAGR GQNSGLAFIL LKPWEERTGD NTSVFDLAAR AQRKFASFRD 660
  661 SMSFAFAPPA VQELGNATGF DLYLQDQAGI GHQALMNARD KFLALASKSP VLQRVRPNGL 720
  721 NDQPQYQLVI DDEKARALGL SLADINSTVT IAWGSSYVND FIDRGRVKRV YVQGRPDSRM 780
  781 NPDDVDKWFV RNDKGDMVPF SAFAEGKWGF GSPKLQRYNG VPAVEVLGEP AAGRSSGEAM 840
  841 KAIEEIMKQM PAGVGYAWTG LSYEERLSGS QAPALYALSL LVVFLCLAAL YESWSIPFSV 900
  901 MLVVPLGVIG ALLATMARGL SNDVFFQVGL LTTIGLSAKN AILIVEFAKS QYEHGKGLVD 960
  961 AAIEACRMRL RPIVMTSLAF MLGVFPLAIS TGAGAGSQHA IGTGVIGGMI TATVLAIFWV1020
 1021 PLFFVAVNSL FARKRKPSQP DTPAEKGALQ