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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47214278
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREKSMSESP SQAGKEIPVK KQKLSSDENS NPDLSGDEND DAVSVESGTN TERPDTPTNT  60
   61 ANAPGRKSWG KGKWKSKKCR YSFKCVNSLR EDHSQPLFGV QFNWHSKEGD PLVFATVGSN 120
  121 RVTLYECHSQ GEIRLLQSYV DADASPVVTQ FDLTRRAQAD ENFYTCAWTY DTNTSHPLLA 180
  181 VAGSRGIIRI INHISMQCIK HYVGHGNAIN ELKFHPRDPN LLLSVSKDHA LRLWNIRTDT 240
  241 LVAIFGGVEG HRDEVLSADF DLLGEKIMSC GMDHSLKLWR IDSERMQNAI RGSYEYNPSK 300
  301 TNRPFVSQKI HFPDFSTRDI HRNYVDCVRW LGDLILSKSC ENAIVCWKPG KMEDDVDHIK 360
  361 ANESNVTILG RFDYSQCDIW YMRFSMDFWQ KMLALGNQVG KLYVWDLEVE DPHKAKCTTL 420
  421 TLPKCTAAIR QTSFSRDSSI LIADHAELQT LGFDNLAYER GSQSELRPLA QPASRATFRL 480
  481 PGLGPEPSAE AVGSKFSGLA GVLSVFCPSK HLVRVDYDAS VLTERDLVLA VQNRGLDVES 540
  541 VFWLRVEGAH SQPSIQTIQE QLGSLAGVSD VRGSLQECAV MVTYRPLLVT QQALKEHIRD 600
  601 LGFSSWSLAD AALSCWQEVS SDWSAHSVTL CIAGMTCSSC SSSIQERISQ MGGVKSIAVS 660
  661 LSDGTATVTF DPRLTEAELL QAAIEEMGFE ASVQVELSGV FFFSSECANG RLSPNRTRRT 720
  721 TVENGVGPQV TRRPEVRTQR CFIAVTGMTC ASCVGNIERK LRSHGGSHAD LCPGITAVFV 780
  781 SLMAAKAEVT YDPDSIGAAG VARLIEDLGF GATVMDQAAA NPGLLELRLS GMTCASCVHK 840
  841 IESKLRSTPG VMAATVSLAT NRAQVRYHPE AVGARDLLAI IQDLGFQAEL EKTGLKQNLD 900
  901 HSKEILQWRN SFLLSLVFGL PVMGLMVYMM VMDSQMQNHG GAMPEDQNLV PGLSLLNLAF 960
  961 FLLCTPVQIF GGRYFYIQAY RALQHRTANM DVLIVLATSI AYVYSCVVLV VAMAEQAQQS1020
 1021 PTTFFDTPPM LFVFIALGRW LEHIAKSKTS EALAKLISLQ ASDATVVTLG PDGAVLSEEQ1080
 1081 VELDLVQRGD VIKVLPGGKF PIDGRVTEGS STADESLITG EPMPVSKKVG SLVLAGSING1140
 1141 HGALLVEATH VGGDTTLSQI VRLVEEAQLS KAPIQKLADR LGGLFVPFIL VVSLLTLAAW1200
 1201 LLVGFSHFHL VEQHFPVEVR HRQPNGEKLG DVEMSLDPRV TTRASPEPRW SFRLTFQASI1260
 1261 TVLSIACPCS LGLATPTAVM VGTGVGARNG ILIKGGEPLE MAHKVCRAGP GLARCVSAEA1320
 1321 ERFPLRQIQA VMFDKTGTLT NGVPRVTRVL VLWEPARLPL RKILALVGTA EASSEHPLGV1380
 1381 AVAAHCRQEL GSDLLGCCQD FQAVPGCGIS CRVSNVDHLL VQEASRDGSS LVPEQEGPGE1440
 1441 SYWVLIGNRE WLRRNGHRVE ADMDAAMASH EAKGQTAVLV AIDGTLCAML AVADTVKAES1500
 1501 ALAVQTLSSM GVQVVMITGD NRRTAKAIAA QVGIGKVFAE VLPSHKVAKV QELQEAGLRV1560
 1561 AMVGDGVNDS PALAQADVGI AIGTGTDVAI EAADIVLIRN DLLDVVASIE LSRKTVRRIR1620
 1621 INFVFALIYN LLGIPVAAGS GGWRLGGADG VCNRGNGACV RRRVPARRPG PAALDGVCCH1680
 1681 GCLLPVCAPV LLTAENVSSA HLPLDHAPSA VLTPPSPQVQ ENPSRIL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle