YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73539701, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTERAATPR RKTQFRALAI GSALLVAVLA LALAPAPVLA QALPGVTSKP GPGGGQIWSL  60
   61 SIQTLVLLTS LSFLPAAVLM MTGFTRIVIV LGLLRNALGT ASSPPNQVLV GLSLFLTFFV 120
  121 MSPVLDRVYN DAYKPLSENR ISLETAMAKA AEPLKGFMLK QTREKDLAMF AQMAKAPEMQ 180
  181 GPEEVPMSIL VPAFVTSELK TAFQIGFTIF IPFLIIDLVV ASVLMAMGMM MVPPATISLP 240
  241 FKLMLFVLVD GWQLLLGSLA QSFMN

Type	Start	End	Confidence
Signal Peptide	1	40	0.69
N-region	1	31
H-region	32	37
C-region	38	40
Cleavage Site	40	41
Non-Cytoplasmic	41	63	0.88
Transmembrane Helix	64	89	0.79
Cytoplasmic	90	104	0.69
Transmembrane Helix	105	125	0.71
Non-Cytoplasmic	126	204	0.75
Transmembrane Helix	205	229	0.83
Cytoplasmic	230	238	0.57
Transmembrane Helix	239	260	0.81
Non-Cytoplasmic	261	265	0.56