YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53761614, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDRTLVISV LIVASCGLGY ELIAGALSSY LLGDSILQFS SIIGCYLFAM GVGSWLSRYV  60
   61 KDEDVLARFI DIEILVGLLG GISAALLFVV FAWLSAPFRT ALYALVFLTG VLVGMEIPLV 120
  121 MRILNARRAA FSDLVSRVLT FDYLGALAVS LVFPLVLAPR LGLSRTGFLF GMLNAAVALY 180
  181 TTRLFRDELP QVPLRTMRAL VVIALLGAGF AGSDRLTHWA ERGLFGDEII HSESTPYQRL 240
  241 VITRWKDDLR LYINGNLQFS SRDEHRYHEA LVHPVMQALP WARRVLVIGG GDGLALREIL 300
  301 RHRNIEHVTL VDLDPAMTTL FSQSAPLRAL NRDSLRDARV TVFNADAAQW MEQNAEVFDA 360
  361 IIVDLPDPSN FGLGKLYSVP MYRLLSRHLA EKGYAVVQST SPYYAPRSFW GIDATLHEAG 420
  421 LHTWPYHAYV PSFGEWGFIL AGKRSDYTPP TRYDMPMKFL DADSTALMFR FPPDMAPRAG 480
  481 HANRLNEQSL VHDFEQDWGN VIR

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	28	0.92
Non-Cytoplasmic	29	35	0.79
Transmembrane Helix	36	57	0.92
Cytoplasmic	58	73	0.83
Transmembrane Helix	74	94	0.94
Non-Cytoplasmic	95	100	0.81
Transmembrane Helix	101	124	0.88
Cytoplasmic	125	137	0.89
Transmembrane Helix	138	158	0.92
Non-Cytoplasmic	159	165	0.73
Transmembrane Helix	166	185	0.90
Cytoplasmic	186	193	0.92
Transmembrane Helix	194	213	0.88
Non-Cytoplasmic	214	503	0.92