YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73541658, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPTISLADT PPPAAPDSRA SRSAPGRNSR QRFTVLPGFG LSLGFTIFYL TLIVLVPLSA  60
   61 TFLKTFTMTW EAFWTTVTAP RVVASYQLSF GASLIAAIIN TVFGLVVAWV LVRYRFPGKR 120
  121 LIDALVDLPF ALPTAVAGIA LTALFAGNGW IGRYLEPLGI KVAFTPLGVV VALTFIGLPF 180
  181 VVRTVQPVLE DVEQELEEAA ASLGATRLQT FIRVILPAIL PALLTGFALS FARATGEYGS 240
  241 VVFISGNMPM VSEIAPLMIY SKLEQYDYAG ATAVAVVMLV ISFGLLLVIN LLQAWTRRHQ 300
  301 SGAHSGLALE APATDKEH

Type	Start	End	Confidence
Cytoplasmic	1	34	0.94
Transmembrane Helix	35	60	0.84
Non-Cytoplasmic	61	89	0.83
Transmembrane Helix	90	112	0.91
Cytoplasmic	113	124	0.82
Transmembrane Helix	125	147	0.86
Non-Cytoplasmic	148	161	0.69
Transmembrane Helix	162	182	0.91
Cytoplasmic	183	210	0.87
Transmembrane Helix	211	232	0.90
Non-Cytoplasmic	233	267	0.73
Transmembrane Helix	268	292	0.88
Cytoplasmic	293	318	0.80