YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91708441, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRQPLSLPQ LSISPLDQGL KAALQAKIDN KTKPRGALGQ LESLALQLGL IQQSLTPVLQ  60
   61 RPAILVFAGD HGVVEEGVSP YPQEVTRQMV MNFLAGGAGI NVFTRQHGMR IKVVDAGVAH 120
  121 VFPAHPELIR AKVGMGTHNF SKMPAMSTQM CDQALINGYR LAQMEAAAGT NVMGFGEMGI 180
  181 GNTTSASAIV AVLCQLPVAQ CVGRGTGLDD AGVMRKAEVI RQAMARHQVD NTDPLAVLAT 240
  241 FGGFEIAMMV GAMLGAAEKR VALLIDGFIA TAALLVASRV APAILEYCIF AHCSDEAGHQ 300
  301 LVLQQLGARP LLNLGLRLGE GTGAAMAYPL VQAAVNFLNE MASFESANIS RQDAS

Type	Start	End	Confidence
Non-Cytoplasmic	1	234	0.55
Transmembrane Helix	235	256	0.70
Cytoplasmic	257	261	0.47
Transmembrane Helix	262	283	0.56
Non-Cytoplasmic	284	355	0.54