YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45521326, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIQESKES LQESLQQVIT LLNKHRLVEE LVHKQDMPKQ ALVQTLVHRQ NLAELQKKLD  60
   61 SLHPADVAYI LEALPLEQRL DVWDLVKAER DGEILLEVSD AVRQTLIADM DSDELLAAAE 120
  121 QLDTDELADL APDLPKDVLQ ELLESLDARN RERLQSALAY ADDSVGALMD FDIITIREDI 180
  181 TLEVALRYLR RIGSLPDHTD KLFVVDRNDV LRGVLPLKRL VVNDLDSGVA EIMADDAVVF 240
  241 HPEDKADEAA KAFERYDLVT APVVDENNRL VGRLTVDAVM DYIREEAESD MLSMAGLREE 300
  301 EDIFASVWKS VQNRWMWLAI NLVTAFVASR VIGLFEGSIE RIVALAALMP IVAGIGGNSG 360
  361 NQTTTMIVRG LALGQISSHN TKSLLIKETG VGLLNGLIWG SVLGVIAYLL YNNVALGIVM 420
  421 TAAMTLNLLL AAVMGVMIPL VMSTKFNRDP AVGSSVLITA VTDSGGFFIF LGLATLFLL

Type	Start	End	Confidence
Cytoplasmic	1	314	0.81
Transmembrane Helix	315	334	0.92
Non-Cytoplasmic	335	341	0.68
Transmembrane Helix	342	361	0.82
Cytoplasmic	362	390	0.75
Transmembrane Helix	391	411	0.92
Non-Cytoplasmic	412	417	0.78
Transmembrane Helix	418	441	0.89
Cytoplasmic	442	451	0.82
Transmembrane Helix	452	477	0.85
Non-Cytoplasmic	478	479	0.82