YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68213835, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKETKEVT YAWEGTDRKG KRVKGEMKAS GEAFVKATLR RQGINVVKIS KQRFKSGGKI  60
   61 TDKDVTLFTR QLATMMKAGV PLLQAFDIVG KGHSNPAVSK LLGDIKADVE TGSSLSQAFR 120
  121 KYPLYFDNLF CNLVGAGEQA GILDSLLDRL ATYKEKILAI KGKIKSALFY PISIIVVAFV 180
  181 ITAVIMIFVI PAFKELFSSF GADLPAPTVM VMAISDFFVD YWWAIFGSIG GALWFFFYTW 240
  241 KRSEKMQSSM DRLLLKMPIF GEVIRKATIA RFSRTLSTMF AAGVPLVEAL DSVAGASGNR 300
  301 VYHDATKKVQ SEISTGASLT VAMQNTEVFP NMVLQMVAIG EESGALDSML GKVADFYEGE 360
  361 VDDAVEALSS LMEPIIMVVL GTLIGGLVIA MYLPIFKMGQ VV

Type	Start	End	Confidence
Cytoplasmic	1	167	0.98
Transmembrane Helix	168	190	0.95
Non-Cytoplasmic	191	218	0.93
Transmembrane Helix	219	240	0.91
Cytoplasmic	241	374	0.77
Transmembrane Helix	375	396	0.93
Non-Cytoplasmic	397	402	0.65