YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47213595
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGPELLLDS SIRLWVVLPI VFITFLVGII RHYVTQLLHS DKKVDLEQVS DSQVLLRSRI  60
   61 LRENGKYIPR QSFAMRKHYF NNAETGFFKT VKRKVVPKNP MTDSGMLTDM MKGNLTNVLP 120
  121 MILIGGWINW AFSGFVITKV PFPLTLRFKP MLQRGIDLLS LDASWVSSAS WYFLNVFGLR 180
  181 SMYSLILGQD NAADQSRIMQ DQMTGAAMAM PPDPNKAFKS EWEALEIVEH KWALEKVEEE 240
  241 LMAGDLNFGG SFSRDASSAA F

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.51
Transmembrane Helix	12	34	0.88
Cytoplasmic	35	114	0.53
Transmembrane Helix	115	138	0.81
Non-Cytoplasmic	139	157	0.50
Transmembrane Helix	158	179	0.60
Cytoplasmic	180	261	0.55