YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72122498, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.71
Transmembrane Helix	41	62	0.72
Cytoplasmic	63	70	0.85
Transmembrane Helix	71	93	0.91
Non-Cytoplasmic	94	116	0.86
Transmembrane Helix	117	139	0.93
Cytoplasmic	140	152	0.85
Transmembrane Helix	153	175	0.85
Non-Cytoplasmic	176	188	0.79
Transmembrane Helix	189	207	0.92
Cytoplasmic	208	214	0.82
Transmembrane Helix	215	237	0.89
Non-Cytoplasmic	238	253	0.88
Transmembrane Helix	254	277	0.81
Cytoplasmic	278	302	0.81
Transmembrane Helix	303	325	0.66
Non-Cytoplasmic	326	332	0.65
Transmembrane Helix	333	357	0.79
Cytoplasmic	358	360	0.53
Transmembrane Helix	361	382	0.63
Non-Cytoplasmic	383	398	0.83
Transmembrane Helix	399	422	0.83
Cytoplasmic	423	430	0.81
Transmembrane Helix	431	450	0.92
Non-Cytoplasmic	451	453	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPEPASTP PGGPAAGQPA PSLLERLFGL SEHQTDVRTE VLAGMTTFLT MAYIIFVNPS  60
   61 ILGDAGMPKD AVFVATCVAA AIGTLIMGFY ANYPIAMAPG MGLNAYFAYT VVKGMGFAWQ 120
  121 AALGAVFISG CLFLLVTLFR VREMIVNGIP HSIRVAITAG IGLFLAIVAL KNAGIVTASP 180
  181 ATLVTIGDLH QPSAVLAIVG FFVIVSLDQL KVKGAILIGI LLTTVLSFFF AGNTFHGVLS 240
  241 APPSISPTLF KLDISAALSI GIVNVVLVFF LVELFDATGT LMGVANRAGL LKAGRMDRLN 300
  301 KALMADSTAI MAGSFLGTSS TTAYIESASG VQAGGRTGLT AVTVAVLFLA CLFIAPLAGT 360
  361 VPAYATAPAL LYVSCLMLRE LLDIDWNDVT EVVPAVLTAL GMPFTYSVAN GVAFGFISYA 420
  421 VLKLMTGRAR NVPVMVWIIA AVFVFKFYYL PGH