YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45522258, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITRKLPVT VLSGFLGAGK TTLLNHILNN REDKRVAVIV NDMSEVNIDA QLIREGGAGL  60
   61 SRSEEKLVEM SNGCICCTLR EDLLVEIKRL AEAGRFDYLL IESTGISEPL PVAETFTFRD 120
  121 ENGASLSDIA RLDTMVTVVD AFNFLRDYAS RDMLAERGSS MGEGDERTVV DLLVEQVEFC 180
  181 DVIVLNKTDL VNQEALQQLH GILKSFNPRA RIVESEFGRV PLARVLDTGL FDFAAAQSAP 240
  241 GWLRELRGEH TPETEQYGIT SFVYRARRPF HPERLWRWFS REWPNVIRSK GYFWMASRPA 300
  301 HCGSWSQAGS ITRHGPAGYW WAATPKAYWP EDMESLSAIR ERFSGEFGDR QQEIVLIGSS 360
  361 MDKVALRQAF DHCLLTDAEL RLGMQAWKNF NDPFPAWDRQ PEESSA

Type	Start	End	Confidence
Signal Peptide	1	21	0.85
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	406	0.99