YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67857670, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.89
Transmembrane Helix	28	44	0.92
Non-Cytoplasmic	45	52	0.81
Transmembrane Helix	53	74	0.93
Cytoplasmic	75	94	0.94
Transmembrane Helix	95	116	0.91
Non-Cytoplasmic	117	120	0.67
Transmembrane Helix	121	142	0.88
Cytoplasmic	143	148	0.91
Transmembrane Helix	149	168	0.94
Non-Cytoplasmic	169	174	0.78
Transmembrane Helix	175	196	0.88
Cytoplasmic	197	222	0.87
Transmembrane Helix	223	241	0.91
Non-Cytoplasmic	242	245	0.76
Transmembrane Helix	246	265	0.93
Cytoplasmic	266	281	0.86
Transmembrane Helix	282	301	0.91
Non-Cytoplasmic	302	314	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGTDLVRRN ENLLQVVRSY YQLTKPRIIP LLLITTAASM WMASKGEVDS FKLFITLLGG  60
   61 TLAAASAQVM NCIYDRDIDY EMLRTRTRPI PSGRVQSSHA LIFAVVLGVM SFSLFLAYIN 120
  121 LLSGLLAMSG IVFYMLVYTH FLKRNTPQNI VIGGAAGSIP PLVGWAAVTG DLSWAPWILF 180
  181 AIIFLWTPPH FWALALMIKD DYAQVNVPMM PVIEGEESTV RQIWWYTLLV IPCTLLLVYP 240
  241 VGASGWLYGA IAILLGAIFI KKTWLLKQNP FDKDMAKSLF KFSILYLMLL CTAMVVDSLP 300
  301 LTREVFMVII NFVS