YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67857122, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALYSFEEKY RRLRQELLGG AIALAGVFCL GTFWYYVIEK WSLTEAAYMT MITLSTVGFS  60
   61 EVRPLDDDSR LFTIVLILLG VITIGYIVNR LTEALIQGYF QDGIRQRQER RLIDTLEHHC 120
  121 IVCGYGRTAR QVAQEFTAED VPFVIIDSRP EQVEEAKQLG YIVIQGDATL DECLINAKID 180
  181 KAVCLVSALT SDAENLYTVL SAKTLNPKIR AIARASTEEA VLKLQRAGAD AVVSPYITGG 240
  241 KRLAAAALRP QVMDFVDGIL TGSDRTFYME EFLLDPKFCP CVGQTLSEAR LRLQSGALVL 300
  301 AIRRSDGTLL GGPTGETELM AGDLLICMGT PEQLRQLNQI LGPITPSPAL RPPRH

Type	Start	End	Confidence
Cytoplasmic	1	16	0.96
Transmembrane Helix	17	38	0.93
Non-Cytoplasmic	39	43	0.86
Transmembrane Helix	44	62	0.80
Cytoplasmic	63	70	0.71
Transmembrane Helix	71	88	0.96
Non-Cytoplasmic	89	355	0.87