YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47212525
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLEWMMNGH AMIYTGVTLA FWSTILVVGI CYTIFDLGFR FNVAWFLTET SPFMWASLGI  60
   61 GLAISLSVVG AAWGIYITGS SIIGGGVKAP RIKTKNLVSI IFCEAVAIYG IIMAIVISNM 120
  121 VENFSGTTPE TIGARNYQAG YSMFGAGLTV GFSNLFCGIC VGIVGSGAAL ADAQNASLFV 180
  181 KILIVEIFGS AIGLFGVIVA ILQPKPAPCG LLPWRYPGLF SNVRTTSDLM SDTVRNDWSR 240
  241 LEGRSPSSAM TRLMLGRTLE RICKGVLLLC LLHFLIMMIL YFDVYSQRFD LFSRFNNARN 300
  301 GSRNNSTAAG NAHHFYYYNI SRPNATSTSY LAAGEQSAQS AQPDANQTPS PKPLPPCPEN 360
  361 PPGLGE

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	35	0.90
Non-Cytoplasmic	36	54	0.84
Transmembrane Helix	55	77	0.93
Cytoplasmic	78	96	0.84
Transmembrane Helix	97	117	0.95
Non-Cytoplasmic	118	145	0.85
Transmembrane Helix	146	170	0.85
Cytoplasmic	171	181	0.72
Transmembrane Helix	182	202	0.89
Non-Cytoplasmic	203	261	0.72
Transmembrane Helix	262	285	0.87
Cytoplasmic	286	366	0.67