YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67922821, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.44
Transmembrane Helix	5	25	0.88
Non-Cytoplasmic	26	30	0.45
Transmembrane Helix	31	53	0.80
Cytoplasmic	54	69	0.50
Transmembrane Helix	70	94	0.83
Non-Cytoplasmic	95	101	0.45
Transmembrane Helix	102	122	0.86
Cytoplasmic	123	130	0.53
Transmembrane Helix	131	150	0.85
Non-Cytoplasmic	151	177	0.55
Transmembrane Helix	178	197	0.92
Cytoplasmic	198	246	0.43
Transmembrane Helix	247	270	0.79
Non-Cytoplasmic	271	275	0.67
Transmembrane Helix	276	298	0.87
Cytoplasmic	299	305	0.59
Transmembrane Helix	306	325	0.72
Non-Cytoplasmic	326	331	0.70
Transmembrane Helix	332	353	0.95
Cytoplasmic	354	377	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYILVFGLL LAGLVLLVVG AEILVRGASR LAGSLGISPL VIGLTIVSYG TSSPEMAVAI  60
   61 QSSLANQAEL ALGNVIGSNI FNVLVILGLS SLAIPLMVAQ QLIRLDVPIM IGVSCLTLLF 120
  121 GLDRTINRSD GIILLLGGII YTVFLIYQGS KQPDDPDSDY EAEYGDKSPL SLGQWTQNIA 180
  181 FILLGVGCLV LGSQWLVESA TDIARQIGVS DLIIGLTIVA AGTSLPELAT SVVAALKGER 240
  241 DIAVGNVVGS NIFNILTVLA VCAIVSPVGV PVSDAALYFD LPVMVAIAIA CLPIFFTGNV 300
  301 IARWEGCLFL SYYIAYTTYL ILYATNHHGL TLFISVMVFV IPLTVITLVI LALNSFREKR 360
  361 QSKQVTNHSL EDQDEIN