YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12744740
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFLRPVLGG SAAMPGATLQ RACRLLVAVC ALHLGVTLVY YLSGRDLSRL PQLVGVSSTL  60
   61 RSGTIGATAN KQPPGARPPP PVGVSSKPRP GPDSSPGTAF DPGLKSNWTS VLVPPTTALL 120
  121 TLPACPEESP LLVGPMVIDF NIAVDLELLA KKNPEIKMGG RYSPKDCISP HKVAIIIPFR 180
  181 NRQEHLKYWL YYLHPVLQRQ QLDYGIYVIN QAGDTMFNRA KLLNIGFQEA LKDHDYNCFV 240
  241 FSDVDLIPMD DHNAYRCFSQ PRHISVAMDK FGFSLPYVQY FGGVSALSKQ QFLAINGFPN 300
  301 NYWGWGGEDD DIFNRIVHKG MSISRPNAVV GRCRMIRHSR DKKNEPNPQR FDRIAHTKET 360
  361 MRFDGLNSLT YQVLNVERYP LYTKITVDIG TPR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.66
Transmembrane Helix	21	42	0.65
Non-Cytoplasmic	43	393	0.99