YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67854113, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLITLQNFL DNSSFLLLFL TMLIYWAGAA FRGLTWLPTL GTTGVAIANL CMATLLGARW  60
   61 LEGGYFPLSN LYESLFFLAW GITAIHLVAE QMSRSHLVGV VTTPVAMGIT AFAALTLPSE 120
  121 MQTSAPLVPA LKSNWLMMHV SVMMLSYATL MVGSVLAIAF LVVTRNQDIQ LKGSSFGTGG 180
  181 YRDRLKKDLF KDNQEEPTVS VVQSSGAGGT AVLESVAIKS EPVTLSPQLL TLADTLDNIS 240
  241 YRIIGLGFPL LTIGIIAGAV WANEAWGSYW SWDPKETWAL ITWLVFAAYL HARITKGWQG 300
  301 RKPAILAASG FMVVWVCYLG VNILGKGLHS YGWFF

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.71
Transmembrane Helix	13	29	0.91
Cytoplasmic	30	38	0.52
Transmembrane Helix	39	58	0.84
Non-Cytoplasmic	59	68	0.71
Transmembrane Helix	69	89	0.88
Cytoplasmic	90	96	0.87
Transmembrane Helix	97	117	0.94
Non-Cytoplasmic	118	142	0.87
Transmembrane Helix	143	163	0.94
Cytoplasmic	164	240	0.97
Transmembrane Helix	241	262	0.90
Non-Cytoplasmic	263	276	0.88
Transmembrane Helix	277	295	0.91
Cytoplasmic	296	303	0.91
Transmembrane Helix	304	325	0.92
Non-Cytoplasmic	326	335	0.86