YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67853694, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQLANRVTQ VTPSLTLAIT AKAKEMKAQG VDICSFSSGE PDFDTPQYIK DAAVSALDQG  60
   61 KTKYGAVAGE PGLREAIARK LNNDSQLNYS PNNVIVTNGG KHSLFNLMLA LIEPGDEVII 120
  121 PAPYWLSYPE MVKLAQGNPI IVDTTAETDY KITPEQLRQA ITSKTKLFVL NSPSNPTGTV 180
  181 YNPAEIKALA EVIVEHNLWV VSDEIYEKIL YDGVVHISIG SLGEEILKRT IISNGFAKSY 240
  241 SMTGWRIGYL AGPEPLIKAV STIQSHSTSN VCTFAQYGAI AALESPKSPP CLQTMRDAFS 300
  301 QRRQVILEKI RAIPQLSCPT PMGSFYVFVD ISKTGLNSLE FCDQLLEKQQ VAAIPGKAFG 360
  361 ADHCIRLSYA TDLASIEKGM DRIERFVQET KVNQL

Type	Start	End	Confidence
Signal Peptide	1	23	0.53
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	395	0.99