YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|144978642, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIEISNDT RVIRHRTPAR ISHWMLVICF FMTMFTGVAF FFPDFAWLTE ILGTPQIARA  60
   61 IHPFTGILMF FAFIYLALLY WDHNIPEKND IRWAKGVVEV LKGNEHAVAD NGKYNLGQKM 120
  121 LFWTLNLAMV TLLVTGIIMW RQYFSHYFSI PVLRIAILLH SASAFMLFTG ILVHIYMAFW 180
  181 VKGSIRGIVE GWVTVRWAKK HHPRWYREEV LSKLEEDLLN EQSGKKVGKT KVLFKGFGK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	42	0.96
Non-Cytoplasmic	43	59	0.91
Transmembrane Helix	60	81	0.92
Cytoplasmic	82	120	0.97
Transmembrane Helix	121	140	0.95
Non-Cytoplasmic	141	155	0.80
Transmembrane Helix	156	178	0.91
Cytoplasmic	179	239	0.98