YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46133565
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAHSPLFP IFTFVLINLI ILSLSRLGLA VWQSERVSAV DGWLQLFFQG VRMDVVALCY  60
   61 LFGVPALLTT LFHSSKVWVK ILRLWLTFGS VFIIFMEIAT PAFIETYDYR PNRLFIEYLI 120
  121 YPKEVFSMLA EGHLSAVIFS LVFTILAAVI YWKISGWAVK NLGSISWKLR PVIALLVIVV 180
  181 SFLGARSSFQ HRGINPAMVA FSSDALVNSL VLNSGYSVIY AAQQFKDEEK SSEMYGKMDA 240
  241 DEMFRIVKAS RGRPESDYIS DKYPTLTKNV ATYQGKPKNI VILLQESLGA QFIGTLGGKP 300
  301 LSPNVDQLAK EGWLFENLYA TGTRSVRGIE ATTAGFTPTP ARAVVKLNNA QSGFFTIADL 360
  361 LHKQGYNTSF IYGGEKHFDN MASFFYGNGF KDIWDQQDYQ NPKFTGTWGV SDEDLFDKAN 420
  421 ETFTKLQNEG KPFFSLVFSS SNHDPFEYPD GKIELYEQPK ATRNNAAKYA DYALGHFFKM 480
  481 AKQSNYWKDT IFLIVADHDS RVGGASLVPI KHFHIPALIL GDGIMPRRDS RLVSQIDMPT 540
  541 TLLSLAGVSG NYPMIGFDLT QDVNPDRAFM QYDQTQAMMK GNNDVVIQMP NKAAQGYHYD 600
  601 KSTETLTPKE VPDAMKKEAL AHALLGSYLY KNRLYSSGEN K

Type	Start	End	Confidence
Cytoplasmic	1	7	0.96
Transmembrane Helix	8	30	0.91
Non-Cytoplasmic	31	50	0.92
Transmembrane Helix	51	72	0.92
Cytoplasmic	73	81	0.85
Transmembrane Helix	82	104	0.90
Non-Cytoplasmic	105	133	0.92
Transmembrane Helix	134	154	0.92
Cytoplasmic	155	166	0.89
Transmembrane Helix	167	185	0.94
Non-Cytoplasmic	186	641	0.95