YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220061722, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	101	0.99
Transmembrane Helix	102	123	0.92
Non-Cytoplasmic	124	190	0.96
Transmembrane Helix	191	211	0.94
Cytoplasmic	212	232	0.85
Transmembrane Helix	233	254	0.87
Non-Cytoplasmic	255	261	0.75
Transmembrane Helix	262	278	0.61
Cytoplasmic	279	289	0.54
Transmembrane Helix	290	313	0.80
Non-Cytoplasmic	314	362	0.62
Transmembrane Helix	363	385	0.88
Cytoplasmic	386	398	0.81
Transmembrane Helix	399	418	0.89
Non-Cytoplasmic	419	463	0.90
Transmembrane Helix	464	484	0.91
Cytoplasmic	485	491	0.73
Transmembrane Helix	492	514	0.86
Non-Cytoplasmic	515	539	0.75
Transmembrane Helix	540	574	0.63
Cytoplasmic	575	839	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEDAAADP YLPYDGGGDT IPLQEIPKRG SNYNMSNGGG APSSSTHLLD FLEEPIPGVG  60
   61 TYDDFHTIDW VREKCKDRER HRKINSKKKE SAWEFTKSLY DAWSGWLVVT LTGLASGALA 120
  121 GLIDIAADWM NDLKEGVCLS ALWFNHEQCC WTSNETTFAE RDKCPQWKSW AELILGQAEG 180
  181 PGSYIMNYFM YIYWALSFAF LAVCLVKVFA PYACGSGIPE IKTILSGFII RGYLGKWTLM 240
  241 IKTITLVLAV ASGLSLGKEG PLVHVACCCG NIFSYLFPKY SKNEAKKREV LSAASAAGVS 300
  301 VAFGAPIGGV LFSLEEVSYY FPLKTLWRSF FAALVAAFVL RSINPFGNSR LVLFYVEYHT 360
  361 PWYLFELIPF ILLGVFGGLW GAFFIRANIA WCRRQNQRAS YPVLEVILVA AITAVVAFPN 420
  421 PYTRQNTSEL IKELFTDCGP LETSQLCQYR SQMTGSDAGP GVYSAMWQLC LALIFKIIMT 480
  481 IFTFGLKVPS GLFIPSMAIG AIAGRIVGIA MEQLAYYHHD WFFFKEWCEV GADCITPGLY 540
  541 AMVGAAACLG GVTRMTVSLV VIVFELTGGL EYIVPLMAAV MTSKWVGDAF GREGIYEAHI 600
  601 RLNGYPFLDA KEEFTHTTLA REVMRPRRSD PPLAVLTQDD MTVEELQATI NETSYNGFPV 660
  661 IVSKESQRLV GFALRRDITI AIENARRKQE GILPNSRVYF TQHAPTLPAD SPRPLKLRSI 720
  721 LDMSPFTVTD HTPMEIVVDI FRKLGLRQCL VTHNGIVLGI ITKKNILEHL EELKRHTEPL 780
  781 AASWYYHKKR YPSSHGSNGK PGSRVHHVQL IRSFQDGWGG RGDDSEDEEE VGLLDSSSL