YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46129154
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDEPYLGLK VICFISVSNT TNVNVVSLDI PILDNTDSWK SRMKKSDQFI IALEDNEEVD  60
   61 RNNWLRYFST NGYRSVSVIP TLRGLPLYST DMSFMFSHEM MLLRMNNNLA KLSSRILKRT 120
  121 MDIVVGSLAI IIFSPVLLYL YFAVKKDGGN AIYGHPRIGR NGKTFNCLKF RSLIVNSKEV 180
  181 LDELLRTDPQ ARAEWEKDFK LKNDPRITKI GAFIRKTSLD ELPQLFNVLK GEMSLVGPRP 240
  241 IVIDELERYE ENVDYYLMAK PGMTGLWQVS GRNNVDYNTR IYFDSWYVKN WSLWNDIAIL 300
  301 FKTVNVVLKR DGAY

Type	Start	End	Confidence
Cytoplasmic	1	120	0.70
Transmembrane Helix	121	143	0.81
Non-Cytoplasmic	144	314	0.82