YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46129072
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRRSLLVL ALIFISFLVY QQWQLDKNPP VQTEQTTSIT ATSDVPASSP SNSQAIADSQ  60
   61 TRGRIITLEN DVFRLKIDTL GGDVISSELL KYDAELDSKT PFELLKDTKE HIYIAQSGLI 120
  121 GKNGIDTRSG RAQYQIEGDN FKLAEGQESL SVPLLFEKDG VTYQKIFVLK RGSYDLGVDY 180
  181 KIDNQSGQAI EVEPYGQLKH SIVESSGNVA MPTYTGGAYS SSDTNYKKYS FADMQDNNLS 240
  241 IDTKAGWVAV LQHYFVSAWI PNQDVNNQLY TITDSKNNVA SIGYRGPVVT IPSGSQETIT 300
  301 SSLWTGPKLQ NQMATVANNL DLTVDYGWAW FIAKPLFWLL TFIQGIVSNW GLAIICVTIV 360
  361 VKAILYPLTK AQYTSMAKMR ILQPKMQEMR ERFGDDRQRM SQEMMKLYKE EKVNPLGGCL 420
  421 PILLQMPIFI ALYWTFLEAV ELRHAPFFGW IQDLSAQDPY YILPILMGIS MFLLQKMSPT 480
  481 PVTDPTQQKV MNFMPLVFMF FFLWFPSGLV LYWLVSNLIT IAQQQLIYRG LEKKGLHSRK 540
  541 K

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	345	0.99
Transmembrane Helix	346	366	0.90
Cytoplasmic	367	413	0.96
Transmembrane Helix	414	437	0.89
Non-Cytoplasmic	438	457	0.91
Transmembrane Helix	458	475	0.90
Cytoplasmic	476	492	0.81
Transmembrane Helix	493	515	0.89
Non-Cytoplasmic	516	541	0.87