YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46129016
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.73
Transmembrane Helix	5	22	0.80
Cytoplasmic	23	52	0.95
Transmembrane Helix	53	74	0.90
Non-Cytoplasmic	75	79	0.75
Transmembrane Helix	80	104	0.86
Cytoplasmic	105	124	0.93
Transmembrane Helix	125	147	0.92
Non-Cytoplasmic	148	189	0.95
Transmembrane Helix	190	212	0.87
Cytoplasmic	213	218	0.90
Transmembrane Helix	219	240	0.91
Non-Cytoplasmic	241	276	0.94
Transmembrane Helix	277	298	0.90
Cytoplasmic	299	314	0.92
Transmembrane Helix	315	338	0.92
Non-Cytoplasmic	339	363	0.95
Transmembrane Helix	364	386	0.89
Cytoplasmic	387	410	0.87
Transmembrane Helix	411	430	0.89
Non-Cytoplasmic	431	437	0.67
Transmembrane Helix	438	457	0.88
Cytoplasmic	458	463	0.77
Transmembrane Helix	464	483	0.93
Non-Cytoplasmic	484	493	0.75
Transmembrane Helix	494	514	0.92
Cytoplasmic	515	528	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWFFFCVAV LIIGYFIYGK IIEKIFVINP KRQTPAYQVN DGVDYMPMSK TKIWLIQLLN  60
   61 IAGTGPIFGP ILGALYGPVA MLWIVIGCIF AGAVHDYFCG MLSIRHGGAT MPYLAGKFLG 120
  121 RPVKVFINTL ALVLLLLVGV VFVASPAQLM GTITMDVFGA SQSALVLGDA EAVHHSVEAG 180
  181 GIKVWGMDKA TVVALWTAII FAYYILATLL PVDKIIGRIY PLFGALLLFM SVGMVYGLVV 240
  241 SHFSATDPIE FFRTINADGE GLTWAKFTQN FQVKGDVPIW PLLFLTISCG ALSGFHATQT 300
  301 PLMARCTENE SEGRFIFYGA MITEGVIALV WCMVGLAFYE NPQALQDAIS AGSPSKVVYD 360
  361 SSLHFLGFIG GIFAILGVIV LPITSGDTAF RAARLQIAEI FNVDQRSLPK RLLIAVPLFV 420
  421 LGYFISTIDF SVLWRYFTWA NQMTAMVMLW TAAGYLYRYH KFHWVASLPA WFITTVCATY 480
  481 LFYNKIGFGL DYQLSVYLGL ATTIVCIVLF FTMLKPLGTR DEEAYINN