YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47210149
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.96
Transmembrane Helix	12	32	0.87
Non-Cytoplasmic	33	45	0.68
Transmembrane Helix	46	67	0.88
Cytoplasmic	68	75	0.98
Transmembrane Helix	76	99	0.86
Non-Cytoplasmic	100	106	0.75
Transmembrane Helix	107	125	0.92
Cytoplasmic	126	133	0.79
Transmembrane Helix	134	151	0.95
Non-Cytoplasmic	152	156	0.74
Transmembrane Helix	157	177	0.90
Cytoplasmic	178	188	0.90
Transmembrane Helix	189	210	0.88
Non-Cytoplasmic	211	229	0.76
Transmembrane Helix	230	255	0.77
Cytoplasmic	256	257	0.52
Transmembrane Helix	258	279	0.44
Non-Cytoplasmic	280	282	0.38
Transmembrane Helix	283	302	0.75
Cytoplasmic	303	373	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASADRTPVK EGIRIVFLCV CWYTVSSGGN IVNKIILNGF PYPVTVSLFH IFSVVVFLPP  60
   61 LLRAWGVPKT ELPSRYYRWY ILPLAFGKYF ASVSAHFSIW KVPVSYAHTV KATMPIWVVL 120
  121 LSRIIMREKQ TTKVYVSLIP IIGGVLLATV TELSFNVSGL VSALAATLCF SLQNIFSKKV 180
  181 LRDTRIHHLR LLNILGFNAV IFMLPTWILV DLSVFLVNGD LFDVPGWSST LLLLLLSGFC 240
  241 NFAQNVIAFS LLNLVSPLSY AVANATKRIM VISISLLMLR NPVTLTNVLG MMTAIVGVFL 300
  301 YNKAKYDANK EKKLLPSSKS DLSFNDPALE KLQANGSVPF SHGLEQQHNW NNVLSDHFQY 360
  361 SRHAYTTNYS GNH