YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47210001
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.35
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEENIFLFV PNLIGYGRVL LALLAFYLMP CCPWPAVCCY LLSALLDAFD GHAARALNQS  60
   61 TKFGAMLDML TDRCATMCLL VNLALLYPAY TFLFQLSMTL DVASHWLHLH SSTVKGSSSH 120
  121 KSIDLSGNPI LRIYYTSKPV LFVMCAGNEL FFCLLYVLHH MEEPAGVQEQ LQPAAAPVGP 180
  181 HRRPEEGGGG QREGGGGQSH PGGEAGGASV PAPAGAAREP RSLKRPSGSL RITSATIGMD 240
  241 TSWSNFLFQT PSTQSQAETP LQSELLPELT GAAQSPAPEH VVSPPSTVDT AALSEEPLPV 300
  301 KPLAKPSRPA HICATCNKEF KNSYNLRRHQ SVHTGVRMKD RAAREKEEAA KATRAEKQTV 360
  361 PLSLLQLAQP AAVAAEALPQ PGQLGSQQEL QAVSVSIAPA TVTMAAVPQP IQAAVVVVGS 420
  421 MEQAATGCWV SRCWTHSLCP STDRQRQPRC QRQPGEEEPR LRGLREGVPG RLPPEPPPPV 480
  481 PLGREAVLLP HLPAALQEER PHELPRARAP GRRGEAVHLS ALRQGLLQVR PEAAWPWPHP 540
  541 SHSRPSFSRP DHLNSHVRQV HSTERPFKCT VIAEASLRQR AKTARVLPPG ALFLPQTCTS 600
  601 AFATRDRLRA HLIRHEEKVP CHICGKLLSA AYITDHMRVH NQSQHHSCHL CNRSFTTLTY 660
  661 LRVHAQKHHG QEWKESGGAR GVFGGTRRRR ACSSAGCAAF SARPTPSSRV TWAPTPTRAT 720
  721 PVPTRPPWTP PAWPSPCPAP PLWDCW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle