YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68186676, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSWKINKF KTNRAFFEVV VIVVATVIVT ILAIISGGIQ MFCEWFQAHE VVHAPIFGFL  60
   61 FLMSGLAIYG LRSYNETDQE IGSYRDFKHS LQESEEKFRT IFDKANDGIY LIDLHGRFID 120
  121 VNAMACKQTG YSRDEMLQMA YKDMGFPEID YKKQVKELYK KGYTSFESAS ILKDDSTAYG 180
  181 QMRSQIIQYG GKTAILSIAR DITERKKAEE AILEAKIEAE SANRAKSEFL ANMSHELRTP 240
  241 LNSIIGFSDV LYNESHGPLN EYQKKYTSNV LRNGKHLLDI INDILSISNI ETGTMELHIN 300
  301 EFIVSDAIDE VESLMILIAS EKDIDLTCNI DIGMPTIKTD MIKFKQILYN LVHNAIKFTD 360
  361 QGGSVTIGGK ISDDLVHISV KDSGIGVSPE DQDKLFNPFF QLDSSNARKY GGTGLGLALV 420
  421 KKFVEMHGGE IWVESEVGKG STFTFIIPTK PLNSDF

Type	Start	End	Confidence
Cytoplasmic	1	15	0.94
Transmembrane Helix	16	39	0.88
Non-Cytoplasmic	40	50	0.83
Transmembrane Helix	51	71	0.90
Cytoplasmic	72	456	0.94