YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71845412, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRRELEYFF GAIRFFTRLP VPGWVGHSAE ALNHSARYFP AVGLLVGGIG ALVYWLALYL  60
   61 WPQPVAVLLS MAATIYATGA FHEDGLSDTV DGLGGGWEKA RILDIMKDSR VGSYGVVAMV 120
  121 LALLGKFVLL SSLAPALVPF ALLAGHAVSR FCATVLLATM DYVRDDQLSK AKPLANRMSA 180
  181 GAIVVALCFA VAPLLALPWF KAAAGLALAA LATLWLARKF QRWLGGYTGD CLGATQQFAE 240
  241 IVFYLGLMAN LFAQNP

Type	Start	End	Confidence
Cytoplasmic	1	9	0.84
Transmembrane Helix	10	28	0.53
Non-Cytoplasmic	29	37	0.50
Transmembrane Helix	38	61	0.85
Cytoplasmic	62	110	0.74
Transmembrane Helix	111	130	0.90
Non-Cytoplasmic	131	136	0.63
Transmembrane Helix	137	160	0.80
Cytoplasmic	161	173	0.87
Transmembrane Helix	174	195	0.89
Non-Cytoplasmic	196	199	0.67
Transmembrane Helix	200	217	0.89
Cytoplasmic	218	256	0.57