YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71847029, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLIKSNAS GELGLQAMPH PQTHGTAQTK PRKSRWPARL DVLQSATGCI LAVFLMAHMF  60
   61 FVSTILISQQ AFYTVARFFE GAYFFARPYP ALVSCVVAVV IALFIGHAGL AMRKFPAGFR 120
  121 QFNAFRRHKN RFQHSDTSLW WIQAWTGFAL FFMATIHLYD MLTQPALIGP FESADRVWSG 180
  181 NMWPLYLALL FAVELHGGIG LYRLAIKWGW LEGSDPQRSR RRLAIVRYSF SAFFVTLGLV 240
  241 TLLTYIDLGR VHADHAGERY IPPQSISSVD RH

Type	Start	End	Confidence
Cytoplasmic	1	41	0.98
Transmembrane Helix	42	62	0.92
Non-Cytoplasmic	63	88	0.83
Transmembrane Helix	89	111	0.92
Cytoplasmic	112	138	0.93
Transmembrane Helix	139	159	0.94
Non-Cytoplasmic	160	184	0.91
Transmembrane Helix	185	206	0.92
Cytoplasmic	207	223	0.97
Transmembrane Helix	224	246	0.92
Non-Cytoplasmic	247	272	0.98