YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71908605, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNKALNHLE ELLVTFLMGA ATLIIFVSVM HRYLAGVEIP VLQDWLLTLN FSWVQELCII  60
   61 MFVWMAKFGA AYGVRTGIHV GVDVLINRLD DRMRGRFIVF GLLAGALFTG VVGGLGGNFV 120
  121 WENGAHYAFF NFFGIQGEDL YEGPTTPDLE WPTWIVYSAI PLGSSLMCFR FLQVTWGFLK 180
  181 TGELPHHDHG HVEGLEEEVK LPVDVDVYGM GDNLHMHDLK HPQLGERRSG EDRRRAGEAA 240
  241 TDHERRQLQR RGEENQGGEQ

Type	Start	End	Confidence
Cytoplasmic	1	11	0.96
Transmembrane Helix	12	35	0.90
Non-Cytoplasmic	36	50	0.85
Transmembrane Helix	51	71	0.81
Cytoplasmic	72	96	0.86
Transmembrane Helix	97	120	0.91
Non-Cytoplasmic	121	152	0.96
Transmembrane Helix	153	174	0.89
Cytoplasmic	175	260	0.99