YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KDPA_DECAR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.81
Transmembrane Helix	6	28	0.89
Cytoplasmic	29	57	0.85
Transmembrane Helix	58	80	0.90
Non-Cytoplasmic	81	131	0.88
Transmembrane Helix	132	155	0.88
Cytoplasmic	156	172	0.85
Transmembrane Helix	173	191	0.90
Non-Cytoplasmic	192	281	0.90
Transmembrane Helix	282	302	0.91
Cytoplasmic	303	308	0.78
Transmembrane Helix	309	329	0.91
Non-Cytoplasmic	330	406	0.78
Transmembrane Helix	407	429	0.89
Cytoplasmic	430	446	0.88
Transmembrane Helix	447	469	0.92
Non-Cytoplasmic	470	516	0.85
Transmembrane Helix	517	539	0.87
Cytoplasmic	540	555	0.75
Transmembrane Helix	556	579	0.86
Non-Cytoplasmic	580	592	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNHAWILLG IFLVVLLLTV KPLGTYIANV MEGRFRLAGK IESPIYRLCG IRPDEEMGWL  60
   61 KYACAILLFN VLGVLAVYAL QRLQAELPLN PQVFPAVSPD SAFNTAISFA TNTNWQGYVG 120
  121 EATMSYLTQM LALAVQNFFS AATGIVVVIA LIRGFARHTA KTFGNAWVDL TRITLHVLLP 180
  181 ISIIYAVFLT GQGVIQNFNA YKDVTTLEVT SFDNPKLDDA GQPLKDDKGA VVTEPAQTQT 240
  241 QTLAMGPVAS QEAIKMLGTN GGGFMNANSA HPYENPTPLS NFIQMLSIFL IPAALCFTFG 300
  301 RIVGDTRQGW AVLAAMTLMF VALAYTAMHF EQQANPLLTQ LGVDPASGNM EGKETRFGIG 360
  361 DSGLFATITT LASCGAVNAM HDSFTPLGGL VPLIDMQLGE VVFGGVGTGL YGMLVFAIMA 420
  421 VFIAGLMIGR TPEYLGKKIE AFEMKMVSIA ILVTPLLVLV GTAIAVMLAD GKAGIANPGA 480
  481 HGFSEILYAF TSAANNNGSA FAGLSANTPF YNVMLGIAMW FGRFGVIVPV LAIAGSLAAK 540
  541 KRIAVGAGTL PTHGPLFVTL LIGTVLLVGL LNYVPALALG PVIEHLVLWA AH