YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71845602, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	40	0.94
Non-Cytoplasmic	41	68	0.89
Transmembrane Helix	69	95	0.76
Cytoplasmic	96	116	0.96
Transmembrane Helix	117	139	0.88
Non-Cytoplasmic	140	148	0.80
Transmembrane Helix	149	169	0.95
Cytoplasmic	170	177	0.88
Transmembrane Helix	178	199	0.91
Non-Cytoplasmic	200	209	0.76
Transmembrane Helix	210	232	0.92
Cytoplasmic	233	267	0.95
Transmembrane Helix	268	289	0.90
Non-Cytoplasmic	290	310	0.94
Transmembrane Helix	311	332	0.92
Cytoplasmic	333	364	0.96
Transmembrane Helix	365	387	0.89
Non-Cytoplasmic	388	393	0.81
Transmembrane Helix	394	413	0.89
Cytoplasmic	414	440	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANPNTVGK GGKFGDLKRR LWFLLGALVV YRIGAHIPVP GIDPNALADL FNSQKGGILG  60
   61 MFNMFSGGAL SRFTIFALGI MPYISASIIM QLMSVASPQL EALKKEGEAG RRKITQYTRY 120
  121 GTVILALFQG LGIAVALEAQ AGLVNDPGFM FRLTTVSTLL TGTMFLMWLG EQITERGLGN 180
  181 GISIIIFAGI AAGLPNAIGG LLELVRTGAM HPLTALIICI LVVAVTGFVV FVERGQRKIL 240
  241 VNYAKRQVGN KIYGGQSSHL PLKLNMSGVI PPIFASSIIL FPATVANWFG SSESMHWLKD 300
  301 VAGTLSPGQP IYVMLYASAI VFFCFFYTAL VFNSKETADN LKKSGAFVPG IRPGEQTARY 360
  361 IDKILMRLTL IGAAYITVVC LLPEFLILKW NVPFYFGGTS LLIIVVVTMD FMSQVQAYVM 420
  421 SHQYESLLKK ANFKGAPMIK