YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32034652
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIMPIIFI AILYGVWKTL DSMQLPNTIS ILLVALVVIC GGFWAFYKFS ADPRRNAAIA  60
   61 REEKRLNRPL TEEEKAEIQP RSSIGDFFAS LFGVLFFVTV LRSFIFEPFQ IPSGSMEPTL 120
  121 RVGDFLVVNK FSYGIKDPIW QNTLIETGHP ERGDVIVFKA PKQAHVDYIK RVVGVGGDRV 180
  181 KYDSHTQQLT VTHADGKQTV FEYGEGKPNA DFFYHGEMQI ERTEKGDVTH QILNNPFAFN 240
  241 YEPYLFAQEG MPSGEWIVPE GHYFVMGDNR DNSEDSRFWG FVPEKNVVGK ATFIWLSLDK 300
  301 KPNEYPSGLR FDRMFTSIN

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.58
Transmembrane Helix	28	47	0.95
Cytoplasmic	48	83	0.90
Transmembrane Helix	84	106	0.88
Non-Cytoplasmic	107	319	0.94