YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|165976395, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.47
Transmembrane Helix	8	27	0.94
Cytoplasmic	28	36	0.49
Transmembrane Helix	37	59	0.89
Non-Cytoplasmic	60	67	0.48
Transmembrane Helix	68	89	0.77
Cytoplasmic	90	95	0.41
Transmembrane Helix	96	121	0.84
Non-Cytoplasmic	122	161	0.60
Transmembrane Helix	162	183	0.89
Cytoplasmic	184	224	0.91
Transmembrane Helix	225	244	0.89
Non-Cytoplasmic	245	250	0.71
Transmembrane Helix	251	270	0.89
Cytoplasmic	271	280	0.86
Transmembrane Helix	281	301	0.90
Non-Cytoplasmic	302	308	0.71
Transmembrane Helix	309	331	0.91
Cytoplasmic	332	341	0.83
Transmembrane Helix	342	362	0.91
Non-Cytoplasmic	363	377	0.87
Transmembrane Helix	378	401	0.91
Cytoplasmic	402	405	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPIILNGYH TLIAATLVLL IGRFFVSKIK FLQDFNIPEA VAGGLVAAIV ILCLYHWMGL  60
   61 SFQFEKSLQN AFMLAFFSSV GLSADFSRLK QGGMPLVIFL AVVGIFIIIQ NGVGVGLATA 120
  121 LGLDPLVGLV TGSITLTGGH GTGAAWAKIF SEQYGITGIM EMAMASATFG LVAGGLIGGP 180
  181 VARRLVNKMK KDRKQYSKKM DTSAEQYDDS TFESADSIRF ITASSTIETM ALFAACLAFS 240
  241 SVMANAFPDL GLPQFVWALG FGVILRNVLT KVFKFDMFDR AIDVFGNASL SLFLAMALMS 300
  301 IKLWELAGLA GPMLIILVVQ TIVMILYGYF VTFRVMGKDY DAAILTAGHC GFGLGATPTA 360
  361 VANMQSVTET FGPSHKAFLI VPLVGAFFVD ILNLGVITWF VEFLR