YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3927806
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYIGAHGVA ALHKHKYSGV DHSYLAKYVL QPFWTKCVTF FPLWMPPNMI TLVGSMFLVT  60
   61 SAALGFIYSP HLDSPPPRWV HVAHGLLLFL YQTFDAVDGK QARRTNSSSP LGELFDHGCD 120
  121 ALACTFEALA FGSTAMCGKD TFWFWVISAV PFYGATWEHF FTNTLILPVV NGPTEGLMLI 180
  181 YVGHIFTAIV GAEWWVHQFG KSVPFLSWVP ILSEVPTYRA VLYLMIAFAV IPTLTFNVQN 240
  241 VYKVVQARKG SMLLALAMLY PFVVLMAGIL IWDYLSPYDI MVNYPYMVVL GTGLAFGFLV 300
  301 GRMVLAHLCD EPKGLKTNMC LSLLYLPFAI ANTLTARLND GVPLVEEKWV LLGYCVYTGA 360
  361 LYLHFATSVI HEITTALGIY CFRITRKEA

Type	Start	End	Confidence
Cytoplasmic	1	48	0.83
Transmembrane Helix	49	69	0.92
Non-Cytoplasmic	70	140	0.54
Transmembrane Helix	141	161	0.78
Cytoplasmic	162	176	0.71
Transmembrane Helix	177	197	0.89
Non-Cytoplasmic	198	217	0.89
Transmembrane Helix	218	238	0.90
Cytoplasmic	239	251	0.82
Transmembrane Helix	252	272	0.94
Non-Cytoplasmic	273	283	0.79
Transmembrane Helix	284	306	0.89
Cytoplasmic	307	316	0.84
Transmembrane Helix	317	336	0.88
Non-Cytoplasmic	337	359	0.85
Transmembrane Helix	360	382	0.85
Cytoplasmic	383	389	0.88