YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32035543
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVGPYVNGA AVLIGGLIGA FLGSKLPERV KSNLPPLFGL CSMGLGIMLI IGAKNMSAVV  60
   61 LALIVGTIIG ELIYLEKGIG NLAGKMRSTV DKIFPPSGVS HQEFLNQFVA ILILFCASGM 120
  121 GVFGSMKEGM TGDPSVLFIK AILDFFTAGI FAATLGYAVS SIAVPLILVQ VSLALLASLI 180
  181 MPLTTPNMLA DFSTAGGFIM LATGLRICGI KHFAVANMLP ALILVMPFSY FWQMFVA

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.80
Transmembrane Helix	6	26	0.88
Cytoplasmic	27	33	0.79
Transmembrane Helix	34	68	0.73
Non-Cytoplasmic	69	103	0.61
Transmembrane Helix	104	126	0.89
Cytoplasmic	127	135	0.63
Transmembrane Helix	136	169	0.74
Non-Cytoplasmic	170	170	0.29
Transmembrane Helix	171	205	0.66
Cytoplasmic	206	212	0.47
Transmembrane Helix	213	234	0.86
Non-Cytoplasmic	235	237	0.69