YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46143295
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISTLQVIL VFLVSCICGA GSILDEFQTH RPLIACTLIG LVLGDVKTGV IVGGSLELLA  60
   61 LGWMNIGAAL APDAALASVI STILVIVGGQ DIATSIAVAI PLAAAGQVLT YVVRAITVGF 120
  121 QHAADKSVLD GNLNRLDWIH FGALMLQAMR IAIPALIVAL TAGTDVVQTM LNAIPEVVTT 180
  181 GLKIAGGFIA VVGYAMVINM MRAGHLMPFF YAGFVIAAFT DFNLVALGVL GTIMAVLYIQ 240
  241 IHPKYNKSQQ VVVAANQDND LDNRLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.41
Transmembrane Helix	6	24	0.89
Cytoplasmic	25	32	0.40
Transmembrane Helix	33	56	0.67
Non-Cytoplasmic	57	65	0.42
Transmembrane Helix	66	88	0.83
Cytoplasmic	89	91	0.47
Transmembrane Helix	92	118	0.71
Non-Cytoplasmic	119	142	0.59
Transmembrane Helix	143	167	0.77
Cytoplasmic	168	178	0.54
Transmembrane Helix	179	198	0.90
Non-Cytoplasmic	199	213	0.48
Transmembrane Helix	214	239	0.84
Cytoplasmic	240	266	0.65