YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|170717256, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTESTTTVA SPQEMAQIGE NVGVYKATKN QCYSFLSAIS AGAFIALAFV FYTTTQTDLG  60
   61 NAPWGLTKLV GGLVFSLGII MAVVCGSELF TSSTMSLIAR VNKRITTTQM LKNWLVVYLG 120
  121 NFVGSLIIVL LIWFAGQTMA ANGQWGLTIL KTAQHKIHHT WLEAFCLGIL CNIMVCIAVW 180
  181 MSYAGKTLTD KAFIMILPIG LFVASGFEHS VANMFMIPMG IITSHASSTD FWQAINLNPL 240
  241 QFADLDIYHF IFKNLIPVTL GNIIGGGVCI ALMQWFTNKP HRH

Type	Start	End	Confidence
Cytoplasmic	1	31	0.99
Transmembrane Helix	32	53	0.92
Non-Cytoplasmic	54	71	0.84
Transmembrane Helix	72	93	0.91
Cytoplasmic	94	113	0.88
Transmembrane Helix	114	136	0.95
Non-Cytoplasmic	137	160	0.92
Transmembrane Helix	161	183	0.90
Cytoplasmic	184	191	0.88
Transmembrane Helix	192	212	0.89
Non-Cytoplasmic	213	254	0.88
Transmembrane Helix	255	276	0.92
Cytoplasmic	277	283	0.88