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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|3894387
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMVTSKVFS SLQFFTVFYL FTVAFASTEE ATALLKWKAT FKNQNNSFLA SWTTSSNACK  60
   61 DWYGVVCLNG RVNTLNITNA SVIGTLYAFP FSSLPFLENL DLSNNNISGT IPPEIGNLTN 120
  121 LVYLDLNTNQ ISGTIPPQIG SLAKLQIIRI FNNHLNGFIP EEIGYLRSLT KLSLGINFLS 180
  181 GSIPASLGNM TNLSFLFLYE NQLSGFIPEE IGYLRSLTKL SLDINFLSGS IPASLGNLNN 240
  241 LSFLYLYNNQ LSGSIPEEIG YLRSLTYLDL GENALNGSIP ASLGNLNNLS RLDLYNNKLS 300
  301 GSIPEEIGYL RSLTYLDLGE NALNGSIPAS LGNLNNLSRL DLYNNKLSGS IPEEIGYLRS 360
  361 LTYLDLGENA LNGSIPASLG NLNNLSRLDL YNNKLSGSIP EEIGYLRSLT KLSLGNNFLS 420
  421 GSIPASLGNL NNLFMLYLYN NQLSGSIPEE IGYLSSLTNL YLGNNSLNGL IPASFGNMRN 480
  481 LQALFLNDNN LIGEIPSFVC NLTSLELLYM PRNNLKGKVP QCLGNISDLL VLSMSSNSFS 540
  541 GELPSSISNL TSLKILDFGR NNLEGAIPQC FGNISSLQVF DMQNNKLSGT LPTNFSIGCS 600
  601 LISLNLHGNE LEDEIPWSLD NCKKLQVLDL GDNQLNDTFP MWLGTLPELR VLRLTSNKLH 660
  661 GPIRSSGAEI MFPDLRIIDL SRNAFSQDLP TSLFEHLKGM RTVDKTMEVP SYERYYDDSV 720
  721 VVVTKGLELE IVRILSLYTV IDLSSNKFEG HIPSVLGDLI AIRVLNVSHN ALQGYIPSSL 780
  781 GSLSRVESLD LSFNQLSGEI PQQLASLTFL EFLNLSHNYL QGCIPQGPQF RTFESNSYEG 840
  841 NDGLRGYPVS KGCGKDPVSE TNYTVSALED QESNSKFFND FWKAALMGYG SGLCIGISII 900
  901 YFLISTGNLR WLARIIEELE HKIIMQRRKK QRGQRNYRRR NNRF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle