YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32043447, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLVDHLAQ YAAYHRDRRN IFSHFIGIPM IVLSIAVLLA RPALGFGLSP ALLLALAAAL  60
   61 FYLRLDLRFG AAMTALLALT VWGAAQLAAG TTAAWLGWGV GLFVVGWIIQ FVGHYYEGRK 120
  121 PAFVDDLSGL IVGPLFVLAE LAFLLGLRGD VQREVEERAG PTCIREHKRA A

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	40	0.95
Non-Cytoplasmic	41	45	0.71
Transmembrane Helix	46	63	0.91
Cytoplasmic	64	69	0.67
Transmembrane Helix	70	89	0.77
Non-Cytoplasmic	90	93	0.47
Transmembrane Helix	94	116	0.74
Cytoplasmic	117	126	0.46
Transmembrane Helix	127	147	0.84
Non-Cytoplasmic	148	171	0.51