YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3859473
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAHQAVAF QFTVTPDGVD FRLSREALRH IYLSGINSWK KRLIRIKNGI LRGVYPGSPT  60
   61 SWLVVVMATV GSNYCKVDIS MGLVHCIQRC LPTRYGSYGT PQTETLLSMV IFSTGVWATG 120
  121 IFLFRQTLKL LLSYHGWMFE MHSKTSHATK IWAICVRLLS SRRPMLYSFQ TSLPKLPVPS 180
  181 VPATIHRYLD SVRPLLDDEA YFRMESLAKE FQDKIAPRLQ KYLVLKSWWA TNY

Type	Start	End	Confidence
Cytoplasmic	1	48	0.94
Transmembrane Helix	49	71	0.82
Non-Cytoplasmic	72	104	0.90
Transmembrane Helix	105	124	0.91
Cytoplasmic	125	233	0.85