YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66043512, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLVDHLSQ YAAYHRDSRN IVTHFVGIPL IVLAVAVLLS RPGWTVSGLW LSPAALLALG  60
   61 STVFYLRLDR ALGMVMAVLL ALCIWAGANL AQQATMVWLS AGVGLFVIGW IIQFVGHYYE 120
  121 GRKPAFIDDL TGLIIGPLFV VAELAFLMGQ RKALQHAIEE RAGPVGRATR KATT

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	40	0.96
Non-Cytoplasmic	41	45	0.80
Transmembrane Helix	46	66	0.81
Cytoplasmic	67	70	0.75
Transmembrane Helix	71	91	0.85
Non-Cytoplasmic	92	95	0.66
Transmembrane Helix	96	117	0.89
Cytoplasmic	118	125	0.69
Transmembrane Helix	126	148	0.80
Non-Cytoplasmic	149	174	0.70