YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIDC_PSEU2
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKRTILIV ALAIVTYVGV LKWNQDYGQA AMPTQNVAAS TTAPGIPDTA AGTNGSASAD  60
   61 VPSANATANT AAAPLETPAV ASKDLIHVKT DVLDLAIDPV GGDVVQLRLP LYPRRQDRPD 120
  121 VPFQLFDNGG ERTFLAQSGL TGTNGPDARA AGRPVYTSTQ KTYQLADGQD TMVVDLKFSE 180
  181 NGVNYIKRFT FKRGLYDLVM TYVVDNQSAQ PWSGNLFAQL KRDASSDPSS TTATGTATYL 240
  241 GAALWTAAEP YKKVSMKDID KGQVKETVQG GWVAWLQHYF VTAWIPDHNA TNAVQTRKDS 300
  301 QGNYIIGFTS PTLSVAPGAQ GETSATLYAG PKSQAVLKEL SPGLELTVDY GFLWFIAQPI 360
  361 FWLLQHIHAI LGNWGWSIIV LTMLIKGLFF PLSAASYKSM ARMRAVAPKL ALLKEQHGDD 420
  421 RQKMSQAMME LYKKEKINPL GGCLPILVQM PVFLSLYWVL LESVEMRQAP WILWITDLSI 480
  481 KDPFFILPII MGATMFIQQR LNPTPPDPMQ AKVMKMMPII FTFFFLWFPA GLVLYWVVNN 540
  541 TLSIAQQAYI TRKIEAATKK AAV

Type	Start	End	Confidence
Cytoplasmic	1	345	0.50
Transmembrane Helix	346	369	0.56
Non-Cytoplasmic	370	373	0.62
Transmembrane Helix	374	395	0.87
Cytoplasmic	396	436	0.96
Transmembrane Helix	437	461	0.87
Non-Cytoplasmic	462	478	0.91
Transmembrane Helix	479	498	0.88
Cytoplasmic	499	517	0.84
Transmembrane Helix	518	538	0.94
Non-Cytoplasmic	539	563	0.96