YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UBIA_PSEU2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.81
Transmembrane Helix	29	46	0.77
Non-Cytoplasmic	47	50	0.59
Transmembrane Helix	51	76	0.71
Cytoplasmic	77	101	0.74
Transmembrane Helix	102	120	0.86
Non-Cytoplasmic	121	121	0.29
Transmembrane Helix	122	140	0.55
Cytoplasmic	141	144	0.41
Transmembrane Helix	145	166	0.76
Non-Cytoplasmic	167	172	0.46
Transmembrane Helix	173	193	0.73
Cytoplasmic	194	215	0.63
Transmembrane Helix	216	237	0.68
Non-Cytoplasmic	238	241	0.69
Transmembrane Helix	242	262	0.91
Cytoplasmic	263	274	0.82
Transmembrane Helix	275	295	0.88
Non-Cytoplasmic	296	296	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLSLLKSLN RLSPRAWDFI QLTRIDKPIG VYLLLWPTLW AVWIAGKGAP SLQTVCIFVL  60
   61 GVFLMRAAGC VINDFADRKV DGHVKRTEQR PLVSGKVSPR EALVLFAVLV GLSFVLVLFT 120
  121 NAATIWLSFG GLALAASYPF MKRYTYYPQV VLGAAFSWGM PMAFTAETGE LPAAAWLLYI 180
  181 ANLLWTVGYD TYYAMVDRDD DLKIGVKSTA VLFGDADRVI ILTLQGLALG CLMLAGARFE 240
  241 LGACFYIGLL AAAGCFAWEF WSTRERERDA CFKAFLHNHW AGLAIFLGIV ADYAVR