YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23471508, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNTPQQIA EIAVESGVKK AHLGLSSLMI LGFLAGAFIA LGFLLDIHVS TMIPHEWASL  60
   61 GNLLGAVVFP VGLILVVLAG GELLTGNMMS LPMALFAGRI GLGQLVRNWV LVTLANLIGA 120
  121 LFVAYCFGHV VGLTEGAFMA KTVAIANAKV GASFEQAFIS GIGCNWLVCL AVWLSYASKD 180
  181 VIGKVVGMWF PVMAFVAIGF QHIVANMFVI PAAIFAGALS WAQFGDNFVP VFLGNAVGGA 240
  241 VFVGLAYHLA FSNKATQPAE LSRTSGAQTP E

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	45	0.85
Non-Cytoplasmic	46	62	0.81
Transmembrane Helix	63	86	0.87
Cytoplasmic	87	108	0.77
Transmembrane Helix	109	129	0.93
Non-Cytoplasmic	130	156	0.85
Transmembrane Helix	157	177	0.93
Cytoplasmic	178	185	0.86
Transmembrane Helix	186	215	0.75
Non-Cytoplasmic	216	228	0.76
Transmembrane Helix	229	251	0.91
Cytoplasmic	252	271	0.92