YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13676624
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.94
Transmembrane Helix	19	37	0.92
Non-Cytoplasmic	38	69	0.91
Transmembrane Helix	70	91	0.92
Cytoplasmic	92	99	0.92
Transmembrane Helix	100	122	0.91
Non-Cytoplasmic	123	131	0.74
Transmembrane Helix	132	152	0.88
Cytoplasmic	153	163	0.85
Transmembrane Helix	164	189	0.86
Non-Cytoplasmic	190	212	0.94
Transmembrane Helix	213	232	0.94
Cytoplasmic	233	346	0.92
Transmembrane Helix	347	365	0.88
Non-Cytoplasmic	366	372	0.68
Transmembrane Helix	373	394	0.91
Cytoplasmic	395	403	0.76
Transmembrane Helix	404	426	0.83
Non-Cytoplasmic	427	442	0.75
Transmembrane Helix	443	464	0.82
Cytoplasmic	465	483	0.70
Transmembrane Helix	484	503	0.90
Non-Cytoplasmic	504	539	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARDELSVLT ALDVAKTQWY HFTAIIVAGM GFFTDAYDLF SIANVTKLLG RIYYTHQGAP  60
   61 KPGTLPPNVS LAVNGVALCG TLTGQVFFGW LGDKMGRKKV YGLTLAIMVF ASLASGLSFG 120
  121 HTAKGTVSTL CFFRFWLGFG IGGDYPLSAT IMSEYANKKT RGAFIAAVFA MQGFGILFGG 180
  181 IVSLVISTIF DHAYSAPAYE VDAEASLVPQ ADYVWRIILM LGALPAALTY YSRMKMPETA 240
  241 RYTALVARNA KQAAQDMSKV LQVEIEAEQD MVDKLSERDN NNFGLFTKEF AKRHGKHLIG 300
  301 TCTTWFLLDI AYYSSNLFQK DIYSSIGWLP PAKEMNAIHE VFRVSKAQVL IALCGTVPGY 360
  361 WFTVAFIDHL GRFFIQLMGF FFMTVFMFAL AIPYDHWTKK DNRIGFLVMY ALTFFFANFG 420
  421 PNSTTFVVPA EIFPARLRST CHGISSAAGK AGAIVGAFGF LYASQSKDAT KRDVGYPAGI 480
  481 GMKNTLIVLA VCNCLGMFFT FLVPESKGKS LEELSGENED EGTNETSQQP AASNRTVPV