YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13676299
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.97
Transmembrane Helix	67	87	0.92
Non-Cytoplasmic	88	92	0.64
Transmembrane Helix	93	113	0.75
Cytoplasmic	114	152	0.75
Transmembrane Helix	153	174	0.84
Non-Cytoplasmic	175	215	0.76
Transmembrane Helix	216	239	0.91
Cytoplasmic	240	247	0.85
Transmembrane Helix	248	266	0.90
Non-Cytoplasmic	267	274	0.70
Transmembrane Helix	275	295	0.88
Cytoplasmic	296	313	0.91
Transmembrane Helix	314	335	0.96
Non-Cytoplasmic	336	354	0.92
Transmembrane Helix	355	375	0.88
Cytoplasmic	376	416	0.90
Transmembrane Helix	417	436	0.89
Non-Cytoplasmic	437	441	0.67
Transmembrane Helix	442	462	0.83
Cytoplasmic	463	473	0.82
Transmembrane Helix	474	499	0.83
Non-Cytoplasmic	500	513	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPRSRTLPS RIHQGIIEER HNVRHYLQVE VRPNNTQTET EAMNIQSNYS KCFDDDGRLK  60
   61 RTGTFWMATA HIITAVIGSG VLSLAWAVAQ LGWVAGPIVM FLFAVVNLYT SNLLTQCYRT 120
  121 GDSVSGHRNY TYMEAVNSIL GGKKVKLCGL TQYINLFGVA IGYTIAASVS MMAIKRSNCY 180
  181 HSSHGKDPCH MSSNGYMITF GIAEVIFSQI PDFDQVWWLS IVAAIMSFTY SSVGLSLGVA 240
  241 KVAENKSFKG SLMGISIGTV TQAGTVTSTQ KIWRSLQALG AMAFAYSFSI ILIEIQDTIK 300
  301 SPPAEHKTMR KATTLSIAVT TVFYLLCGCM GYAAFGDNAP GNLLTGFGFY NPYWLLDIAN 360
  361 LAIVIHLVGA YQVFSQPLFA FVEKWSARKW PKSNFVTAEY DIPIPCFGVY QLNFFRLVWR 420
  421 TIFVLLTTLI AMLMPFFNDV VGILGAFGFW PLTVYFPIDM YISQKKIGRW TSRWLGLQLL 480
  481 SASCLIISLL AAVGSMAGVV LDLKTYKPFK TSY