YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23471930, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPMLALTDT QISTWVASFM LPLFRIIALL MTMPIIGTTL VPRRVRMYLA VAITVVVAPA  60
   61 LPAMPPVQAL DLSALLLIGE QIIIGAGMGL SLQLFFHIFV IAGQIISTQM GMGFASMVDP 120
  121 TNGVSSATIG QFFTMLVTLL FLAMNGHLVV LEVLVESFTT MPVGSGLLVN NFWELANGLG 180
  181 WVLASGLRLV LPAITALLII NIAFGVMTRA APQLNIFSIG FPLTLVLGMV ILWMTMGDML 240
  241 NQYQPIATQA LQALRDMVRA R

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.82
Transmembrane Helix	15	37	0.84
Cytoplasmic	38	46	0.65
Transmembrane Helix	47	67	0.88
Non-Cytoplasmic	68	81	0.68
Transmembrane Helix	82	107	0.75
Cytoplasmic	108	126	0.57
Transmembrane Helix	127	151	0.78
Non-Cytoplasmic	152	181	0.62
Transmembrane Helix	182	205	0.85
Cytoplasmic	206	213	0.67
Transmembrane Helix	214	236	0.90
Non-Cytoplasmic	237	261	0.78