YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23472660, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSNAMKSSI GWAWLHTLGS PKGFYRVSAR LLPWMSVVAV LLLVIGMVWG LAFAPPDYQQ  60
   61 GNSFRIIYIH VPAAMLAQSC YVMLAVCGLV GLVWRIKLAD VALHCAAPIG AWMTALALAT 120
  121 GAIWGKPTWG AWWVWDARLT SMLILLFLYF GLIALGNAIS NRDSAAKACA VLAIVGVVNI 180
  181 PIIKYSVEWW NTLHQGSTFS LTEKPAMPAE MWLPLLFTTL GFYCLFGVLL MMRMRLEVLR 240
  241 REARTQWVKA EILRSLGHTA AQSENTL

Type	Start	End	Confidence
Cytoplasmic	1	30	0.97
Transmembrane Helix	31	53	0.93
Non-Cytoplasmic	54	72	0.85
Transmembrane Helix	73	94	0.93
Cytoplasmic	95	100	0.90
Transmembrane Helix	101	124	0.89
Non-Cytoplasmic	125	136	0.83
Transmembrane Helix	137	159	0.86
Cytoplasmic	160	167	0.76
Transmembrane Helix	168	187	0.91
Non-Cytoplasmic	188	210	0.95
Transmembrane Helix	211	232	0.90
Cytoplasmic	233	267	0.96