YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66044052, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKAAKVIV YTWEGVDKKG TKTSGELSGH NLALVKAQLR KQGINPTKVR KKSVSIFGKG  60
   61 KKIKPLDIAF FSRQMATMMK AGVPLLQSFD IISEGAENPN MRALVGSLKQ EVSAGNSFAT 120
  121 ALRQKPEYFD DLFCNLVDAG EQAGALESLL DRVASYKEKT EKLKAKIKKA MTYPIAVLIV 180
  181 ALIVSGILLI KVVPQFQSVF ASFGAQLPTF TLMVIGLSDV VQKWWLAIVG LFFVSFFIFK 240
  241 RAYKQSQKFR DSLDRLLLKV PIIGPLIFKS SVARYARTLA TTFAAGVPLV EALDSVAGAT 300
  301 GNVVFKNAVI KVKQDVSTGM QLNFSMRSTG VFPSLAIQMT AIGEESGALD TMLDKVATYY 360
  361 EDEVDNMVDN LTSLMEPMIM AFLGVIVGGL VIAMYLPIFQ LGNVV

Type	Start	End	Confidence
Cytoplasmic	1	170	0.98
Transmembrane Helix	171	193	0.91
Non-Cytoplasmic	194	220	0.92
Transmembrane Helix	221	240	0.91
Cytoplasmic	241	377	0.78
Transmembrane Helix	378	399	0.92
Non-Cytoplasmic	400	405	0.64